Robert and Art continue to amaze me with their Xuggler project. If you are like me and have had to use FFMPEG in a project (Java in my case), you know how hard it can be to get everything working correctly. Xuggler has some how made this even more easy than with their 1.0 version. Through the use of their MediaTool you can do some incredible stuff; the stuff that should have been possible with JMF! Do yourself a favor and check out their post about the MediaTool.
As a minor side note, Xuggler has changed its license to AGPL with the 3.0 release.